STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0482Putative amino acid permease; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0531;TC:2.A.3.2.3. (490 aa)    
Predicted Functional Partners:
MS53_0108
Identified by sequence similarity; putative; ORF located using Blastx;COG0366.
   
 0.991
pgiB
Glucose-6-phosphate isomerase; Identified by sequence similarity; putative; ORF located using GeneMark;Blastx;COG0166.
  
    0.786
MS53_0491
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG4487.
 
     0.709
MS53_0415
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.708
MS53_0481
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0477.
  
 
 0.693
MS53_0423
Putative amino acid permease; Identified by sequence similarity; putative; ORF located using Blastx;COG0531;TC:2.A.3.6.1.
  
     0.670
MS53_0372
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
 
     0.662
rpoC
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.565
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.565
pdhD
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark;Blastx;COG1249.
   
 
 0.510
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.