STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0502Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx. (809 aa)    
Predicted Functional Partners:
MS53_0501
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.778
pepO
Endopeptidase O; Identified by sequence similarity; putative; ORF located using Blastx;COG3590.
     
 0.548
MS53_0503
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0561.
       0.454
MS53_0504
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.454
thiI
Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
       0.454
oppB
Putative Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0601;TC:3.A.1.5.2.
  
 
 0.413
oppB-1
Oligopeptide ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0601;TC:3.A.1.5.2.
  
 
 0.413
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.2.
  
  
 0.402
oppC-1
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.1.
  
  
 0.402
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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