STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (459 aa)    
Predicted Functional Partners:
potB
Spermidine/putrescine ABC transporter permease protein PotB; Identified by sequence similarity; putative; ORF located using Blastx;COG1176;TC:3.A.1.11.1.
  
  0.988
potC
Spermidine/putrescine transport system permease PotC; Identified by sequence similarity; putative; ORF located using Blastx;COG1177;TC:3.A.1.11.1.
 
  
  0.987
MS53_0511
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0687.
    
  0.958
oppD-1
Oligopeptide ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
 
     
0.900
MS53_0506
Putative ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1132;TC:3.A.1.106.1.
       0.412
MS53_0507
Putative ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG1132;TC:3.A.1.123.1.
      
0.412
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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