Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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potASpermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (459 aa)    
Predicted Functional Partners:
potB
Spermidine/putrescine ABC transporter permease protein PotB; Identified by sequence similarity; putative; ORF located using Blastx;COG1176;TC:3.A.1.11.1.
  
  0.988
potC
Spermidine/putrescine transport system permease PotC; Identified by sequence similarity; putative; ORF located using Blastx;COG1177;TC:3.A.1.11.1.
 
  
  0.987
MS53_0511
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0687.
    
  0.958
oppD-1
Oligopeptide ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
 
     
0.900
MS53_0330
Putative ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
 
  
 
0.529
MS53_0383
Putative glycerol transporter subunit A; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG3839.
 
  
 
0.513
MS53_0102
Putative ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
 
  
 
0.504
ecfA2
Putative ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
0.498
ecfA1
Putative ABC transporter atp-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.462
MS53_0506
Putative ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1132;TC:3.A.1.106.1.
       0.412
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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