Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ktrAPutative potassium uptake protein KtrA; Identified by sequence similarity; putative; ORF located using Blastx;COG0569;TC:2.A.38.4.3. (231 aa)    
Predicted Functional Partners:
ktrB
Putative potassium uptake protein KtrB; Identified by sequence similarity; putative; ORF located using Blastx;COG0168;TC:2.A.38.4.2.
 
 
 0.996
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
    0.647
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
   
  
 0.606
MS53_0435
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1970.
     
 0.598
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.
  
  
 0.591
potB
Spermidine/putrescine ABC transporter permease protein PotB; Identified by sequence similarity; putative; ORF located using Blastx;COG1176;TC:3.A.1.11.1.
  
  
 0.577
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
      
 0.536
pta
Phosphate acetyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG0280.
   
  
 0.488
tdk
Thymidine kinase; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG1435.
       0.466
pknB
Serine/threonine-protein kinase; Identified by sequence similarity; putative; ORF located using Blastx;COG0515.
  
  
 0.457
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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