STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0526Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG3611. (342 aa)    
Predicted Functional Partners:
MS53_0525
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.734
MS53_0528
Identified by sequence similarity; putative; ORF located using Blastx;COG0258.
     
 0.721
dnaE
DNA polymerase III alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx;COG0587.
     
 0.675
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
    0.664
MS53_0527
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0237.
  
    0.649
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
     0.648
MS53_0511
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0687.
  
     0.624
MS53_0530
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.511
MS53_0090
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1295.
  
     0.507
atpC
Putative ATP synthase epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.486
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.