Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MS53_0536Putative transcription regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG2030. (178 aa)    
Predicted Functional Partners:
MS53_0535
Putative citrate lyase beta chain; Identified by sequence similarity; putative; ORF located using Blastx;COG2301.
  
 
 0.985
MS53_0537
Identified by sequence similarity; putative; ORF located using Blastx;COG0427.
  
 
 0.985
MS53_0538
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1881.
  
    0.778
MS53_0539
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1881.
  
    0.767
ssb
Single stranded binding protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0629.
   
   0.572
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.548
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.540
MS53_0528
Identified by sequence similarity; putative; ORF located using Blastx;COG0258.
     
 0.478
ldh
L-lactate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx;COG0039; Belongs to the LDH/MDH superfamily.
  
 
 0.409
MS53_0713
Hypothetical protein.
       0.403
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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