STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0537Identified by sequence similarity; putative; ORF located using Blastx;COG0427. (444 aa)    
Predicted Functional Partners:
MS53_0536
Putative transcription regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG2030.
  
 
 0.984
MS53_0535
Putative citrate lyase beta chain; Identified by sequence similarity; putative; ORF located using Blastx;COG2301.
  
  
 0.828
MS53_0538
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1881.
       0.768
MS53_0539
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1881.
       0.756
ssb
Single stranded binding protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0629.
       0.542
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.542
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.531
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.403
MS53_0713
Hypothetical protein.
       0.403
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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