Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MS53_0538Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1881. (179 aa)    
Predicted Functional Partners:
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
   0.900
MS53_0539
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1881.
 
    
0.800
rpmJ
50S ribosomal protein L36; Identified by sequence similarity; putative; ORF located using Blastx;COG0257; Belongs to the bacterial ribosomal protein bL36 family.
  
   0.782
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
   0.781
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.780
rpmF
50S ribosomal protein L32; Identified by sequence similarity; putative; ORF located using Blastx;COG0333; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.779
rpmA
50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG0211; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.779
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
   0.779
MS53_0535
Putative citrate lyase beta chain; Identified by sequence similarity; putative; ORF located using Blastx;COG2301.
  
    0.778
MS53_0536
Putative transcription regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG2030.
  
    0.778
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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