STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (100 aa)    
Predicted Functional Partners:
rpmA
50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG0211; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.999
rpsP
30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx;COG0228; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.998
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.998
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.998
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.998
rpmB
50S ribosomal protein L28; Identified by sequence similarity; putative; ORF located using Blastx;COG0227; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.998
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.998
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.998
rpsI
30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Blastx;COG0103; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.998
rpmG
50S ribosomal protein L33; Identified by sequence similarity; putative; ORF located using Blastx;COG0267; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.998
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.