Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MS53_0590Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;TC:9.B.4.4.1. (573 aa)    
Predicted Functional Partners:
MS53_0463
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx.
  
     0.753
MS53_0036
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG1404.
 
 
 
 0.625
MS53_0041
Putative ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1136;TC:3.A.1.125.1.
  
    0.547
MS53_0472
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark;Blastx.
  
     0.524
MS53_0471
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0810.
  
     0.498
MS53_0517
Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.484
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.464
MS53_0466
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.457
MS53_0462
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.451
MS53_0588
Putative transposase; Identified by sequence similarity; putative; ORF located using Blastx.
       0.417
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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