STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0613Putative ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Blastx. (2636 aa)    
Predicted Functional Partners:
MS53_0612
Putative ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1136.
 
 
 0.995
MS53_0041
Putative ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1136;TC:3.A.1.125.1.
  
 
 0.994
lysS
lysyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Blastx;COG1190; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.805
MS53_0101
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG1284.
  
     0.763
MS53_0458
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
 
    0.752
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
   
 
 0.732
MS53_0329
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
  
     0.710
MS53_0671
Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.
 
     0.708
MS53_0285
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.667
MS53_0334
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.655
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.