Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
MS53_0671Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination. (226 aa)    
Predicted Functional Partners:
recR
Putative recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
   
 
 0.899
MS53_0090
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1295.
  
     0.748
MS53_0511
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0687.
 
     0.744
MS53_0328
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
  
     0.740
MS53_0458
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
  
     0.740
MS53_0371
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;TC:1.C.57.1.1.
  
     0.725
rncS
dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.724
MS53_0613
Putative ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.708
MS53_0349
Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx.
 
    0.703
MS53_0415
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.698
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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