rncS protein (Mycoplasma synoviae) - STRING interaction network

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rncS

dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (231 aa)

Predicted Functional Partners:

rplS

0.989

rplM

0.988

rpsI

0.987

rpsF

0.987

rpmA

0.987

rpsO

0.987

rpsP

0.986

rpmF

0.986

rpsL

0.985

rpmG

0.985

Your Current Organism:

Mycoplasma synoviae

NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rncS	rplM	MS53_0675	MS53_0076	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.988
rncS	rplS	MS53_0675	MS53_0012	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.989
rncS	rpmA	MS53_0675	MS53_0550	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG0211; Belongs to the bacterial ribosomal protein bL27 family.	0.987
rncS	rpmF	MS53_0675	MS53_0163	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L32; Identified by sequence similarity; putative; ORF located using Blastx;COG0333; Belongs to the bacterial ribosomal protein bL32 family.	0.986
rncS	rpmG	MS53_0675	MS53_0124	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L33; Identified by sequence similarity; putative; ORF located using Blastx;COG0267; Belongs to the bacterial ribosomal protein bL33 family.	0.985
rncS	rpsF	MS53_0675	MS53_0532	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.987
rncS	rpsI	MS53_0675	MS53_0077	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Blastx;COG0103; Belongs to the universal ribosomal protein uS9 family.	0.987
rncS	rpsL	MS53_0675	MS53_0049	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.985
rncS	rpsO	MS53_0675	MS53_0562	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.987
rncS	rpsP	MS53_0675	MS53_0010	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx;COG0228; Belongs to the bacterial ribosomal protein bS16 family.	0.986
rplM	rncS	MS53_0076	MS53_0675	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	dsRNA-specific ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.988
rplM	rplS	MS53_0076	MS53_0012	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplM	rpmA	MS53_0076	MS53_0550	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG0211; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmF	MS53_0076	MS53_0163	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32; Identified by sequence similarity; putative; ORF located using Blastx;COG0333; Belongs to the bacterial ribosomal protein bL32 family.	0.998
rplM	rpmG	MS53_0076	MS53_0124	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L33; Identified by sequence similarity; putative; ORF located using Blastx;COG0267; Belongs to the bacterial ribosomal protein bL33 family.	0.998
rplM	rpsF	MS53_0076	MS53_0532	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.998
rplM	rpsI	MS53_0076	MS53_0077	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Blastx;COG0103; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsL	MS53_0076	MS53_0049	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.998
rplM	rpsO	MS53_0076	MS53_0562	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.998
rplM	rpsP	MS53_0076	MS53_0010	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx;COG0228; Belongs to the bacterial ribosomal protein bS16 family.	0.998

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