Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgpBMembrane-associated phospholipid phosphatase; Identified by sequence similarity; putative. (251 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Identified by sequence similarity; putative; Belongs to the phosphatidylserine decarboxylase family.
 
   
 0.854
pssA
Phosphatidylserine synthase; Identified by sequence similarity; putative.
 
   
 0.843
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Identified by sequence similarity; putative; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.797
lpd
Fatty acid/phospholipid biosynthesis enzyme; Identified by sequence similarity; putative.
  
  
 0.743
PAM_282
Hypothetical protein; Identified by Glimmer2.
 
  
 0.737
norM
Na+-driven multidrug efflux pump; Identified by sequence similarity; putative.
 
  
 0.720
norM-2
Na+-driven multidrug efflux pump; Identified by sequence similarity; putative.
 
  
 0.700
topA
Topoisomerase IA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superco [...]
   
  
 0.689
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.683
PAM_718
Phosphatidylglycerophosphate synthase; Identified by sequence similarity; putative.
  
  
 0.591
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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