STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prfAPeptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (351 aa)    
Predicted Functional Partners:
rplI
Exopolyphosphatase-related protein; Binds to the 23S rRNA
  
 0.999
rplQ
50S ribosomal protein L17; Identified by sequence similarity; putative
  
 0.998
rpsP
Small subunit ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family
  
 0.997
rpsI
Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family
  
 0.996
rpsG
Small subunit ribosomal protein s7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
  
 0.995
rplV
Large subunit ribosomal protein l22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity)
  
 0.994
rpsL
Small subunit ribosomal protein s12; With S4 and S5 plays an important role in translational accuracy
  
 0.994
rpsF
Small subunit ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA
  
 0.993
rplM
Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
 
 
 0.993
rplS
Large subunit ribosomal protein l19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
  
 0.993
Your Current Organism:
Phytoplasma onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows, Onion yellows phytoplasma OY-M
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