Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
PAM_019Conserved hypothetical protein; Identified by sequence similarity; putative. (155 aa)    
Predicted Functional Partners:
cbiO
ABC-type cobalt transport system, ATPase; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
  
 0.950
cbiQ
ABC-type cobalt transport system, permease; Identified by sequence similarity; putative.
  
 
 0.890
cbiO-2
ABC-type cobalt transport system, ATPase; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
 0.821
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
  
    0.624
oppF
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative.
  
  
 0.501
PAM_193
Conserved hypothetical protein; Identified by sequence similarity; putative; ATPase components of various ABC-type transport system.
  
  
 0.501
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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