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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAM_024Conserved hypothetical protein; Identified by sequence similarity; putative. (263 aa)    
Predicted Functional Partners:
argE
Acetylornithine deacetylase; Identified by sequence similarity; putative.
  
  
 
0.901
argE-2
Possible pseudogene of acetylornithine deacetylase; identified by sequence similarity.
 
     0.841
nadE
NAD synthase; Identified by sequence similarity; putative.
   
 
 0.754
gmk-2
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 
 0.707
PAM_023
Hypothetical protein; Identified by Glimmer2.
  
  
 0.642
lysU
lysyl-tRNA synthetase class II; Identified by sequence similarity; putative; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.620
sfcA
Malic enzyme; Identified by sequence similarity; putative.
   
 
 0.620
pepP
xaa-Pro aminopeptidase; Identified by sequence similarity; putative; Belongs to the peptidase M24B family.
   
 
 0.608
glnS
Glutamyl- and glutaminyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
   
 
 0.593
glnS-2
Glutamyl- and glutaminyl-tRNA synthetase; Identified by sequence similarity; putative.
   
 
 0.593
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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