Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAM_024Conserved hypothetical protein; Identified by sequence similarity; putative. (263 aa)    
Predicted Functional Partners:
argE
Acetylornithine deacetylase; Identified by sequence similarity; putative.
  
  
 
0.901
argE-2
Possible pseudogene of acetylornithine deacetylase; identified by sequence similarity.
 
     0.841
nadE
NAD synthase; Identified by sequence similarity; putative.
   
 
 0.638
sfcA
Malic enzyme; Identified by sequence similarity; putative.
   
 
 0.591
pgi
Glucose-6-phosphate isomerase; Identified by sequence similarity; putative.
   
 
 0.582
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Identified by sequence similarity; putative; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 
 0.579
pepP
xaa-Pro aminopeptidase; Identified by sequence similarity; putative; Belongs to the peptidase M24B family.
   
 
 0.566
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.558
gmk-2
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 
 0.551
PAM_023
Hypothetical protein; Identified by Glimmer2.
     
 0.546
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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