Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PAM_075Hypothetical protein; Possible pseudogene of DNA primase (DnaG); identified by sequence similarity. (292 aa)    
Predicted Functional Partners:
dnaB-2
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.929
PAM_571
Hypothetical protein; Possible pseudogene of replicative DNA helicase (DnaB); identified by sequence similarity.
  
 
 0.791
dnaB-3
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.737
dnaB-4
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.737
dnaB-5
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.737
dnaB-6
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.737
dnaB-7
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.737
dnaB-9
Replicative DNA helicase; Identified by sequence similarity; putative.
  
 
 0.737
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.735
der
Conserved hypothetical protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.699
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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