Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAM_080Hypothetical protein; Possible pseudogene of transposase (Tra5); identified by sequence similarity. (81 aa)    
Predicted Functional Partners:
PAM_035
Hypothetical protein; Identified by Glimmer2.
      
 0.464
PAM_057
Hypothetical protein; Identified by Glimmer2.
      
 0.464
PAM_250
Conserved hypothetical protein; Identified by sequence similarity; putative.
      
 0.464
PAM_291
Conserved hypothetical protein; Identified by sequence similarity; putative.
      
 0.464
PAM_300
Conserved hypothetical protein; Identified by sequence similarity; putative; predicted HD superfamily hydrolase.
      
 0.464
PAM_304
Hollyday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
      
 0.464
PAM_419
Hypothetical protein; Identified by Glimmer2.
      
 0.464
PAM_483
Conserved hypothetical protein; Identified by sequence similarity; putative; similar to hypothetical protein of Plasmodium falciparum.
      
 0.464
PAM_575
Hypothetical protein; Identified by Glimmer2.
      
 0.464
PAM_711
Hypothetical protein; Identified by Glimmer2.
      
 0.464
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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