Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAM_134Permease component of an uncharacterized ABC; Identified by sequence similarity; putative. (233 aa)    
Predicted Functional Partners:
abc
Uncharacterized ABC-type transport system ATPase; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
 0.999
nlpA-2
ABC-type uncharacterized transport system, periplasmic component; Identified by sequence similarity; putative.
  
 0.995
nlpA
ABC-type uncharacterized transport system, periplasmic component; Identified by sequence similarity; putative.
  
 0.981
PAM_098
Conserved hypothetical protein; Identified by sequence similarity; putative.
  
 
 0.912
PAM_135
Conserved hypothetical protein; Identified by sequence similarity; putative.
       0.578
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
    0.481
rpsO
Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
     
 0.475
rluA
Pseudouridylate synthases; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.466
hisS
histidyl-tRNA synthetase; Identified by sequence similarity; putative.
  
    0.465
nadE
NAD synthase; Identified by sequence similarity; putative.
       0.450
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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