node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplI | PAM_200 | PAM_012 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | 0.999 |
rplC | rplM | PAM_200 | PAM_138 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplC | rplU | PAM_200 | PAM_086 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplC | rpmA | PAM_200 | PAM_088 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L27; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplC | rpmB | PAM_200 | PAM_106 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L28; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
rplC | rpsB | PAM_200 | PAM_165 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S2; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplC | rpsF | PAM_200 | PAM_009 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplC | rpsI | PAM_200 | PAM_139 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S9; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplC | rpsO | PAM_200 | PAM_136 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rplC | rpsR | PAM_200 | PAM_011 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplI | rplC | PAM_012 | PAM_200 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
rplI | rplM | PAM_012 | PAM_138 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplI | rplU | PAM_012 | PAM_086 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplI | rpmA | PAM_012 | PAM_088 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein L27; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplI | rpmB | PAM_012 | PAM_106 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein L28; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
rplI | rpsB | PAM_012 | PAM_165 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein S2; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplI | rpsF | PAM_012 | PAM_009 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplI | rpsI | PAM_012 | PAM_139 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein S9; Identified by sequence similarity; putative; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplI | rpsO | PAM_012 | PAM_136 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
rplI | rpsR | PAM_012 | PAM_011 | Exopolyphosphatase-related protein; Binds to the 23S rRNA. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |