STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplRThis is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)    
Predicted Functional Partners:
rpsF
Small subunit ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA
  
 
 0.999
rpsR
Small subunit ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
   
 
 0.999
rplI
Exopolyphosphatase-related protein; Binds to the 23S rRNA
  
 
 0.999
rpsT
Small subunit ribosomal protein s20; Binds directly to 16S ribosomal RNA
  
 
 0.999
rplU
Large subunit ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20
  
 
 0.999
rpmA
Large subunit ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family
  
 
 0.999
rpmE
Large subunit ribosomal protein l31; Binds the 23S rRNA
  
 
 0.999
rpmB
Large subunit ribosomal protein l28; Belongs to the bacterial ribosomal protein bL28 family
   
 
 0.999
rpsO
Small subunit ribosomal protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA
  
 
 0.999
rplM
Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
  
 0.999
Your Current Organism:
Phytoplasma onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows, Onion yellows phytoplasma OY-M
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