Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAM_298Uncharacterized BCR; Identified by sequence similarity; putative. (71 aa)    
Predicted Functional Partners:
PAM_297
Hypothetical protein; Identified by Glimmer2.
       0.811
PAM_299
N6-adenine-specific methylase; Identified by sequence similarity; putative.
       0.765
PAM_301
Conserved hypothetical protein; Identified by sequence similarity; putative; predicted hydrolase of the HAD superfamily.
     
 0.714
PAM_300
Conserved hypothetical protein; Identified by sequence similarity; putative; predicted HD superfamily hydrolase.
       0.713
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
    0.707
PAM_304
Hollyday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
       0.676
smtA
SAM-dependent methyltransferase; Identified by sequence similarity; putative.
       0.665
rpsO
Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
    0.597
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
    0.594
rpmF
Ribosomal protein L32; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.573
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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