STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAM_304Hollyday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (151 aa)    
Predicted Functional Partners:
PAM_300
Conserved hypothetical protein; Identified by sequence similarity; putative; predicted HD superfamily hydrolase.
     
 0.947
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.846
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
    0.843
smtA
SAM-dependent methyltransferase; Identified by sequence similarity; putative.
       0.825
PAM_301
Conserved hypothetical protein; Identified by sequence similarity; putative; predicted hydrolase of the HAD superfamily.
       0.820
PAM_299
N6-adenine-specific methylase; Identified by sequence similarity; putative.
       0.813
PAM_291
Conserved hypothetical protein; Identified by sequence similarity; putative.
     
 0.756
PAM_035
Hypothetical protein; Identified by Glimmer2.
      
 0.720
PAM_057
Hypothetical protein; Identified by Glimmer2.
      
 0.720
PAM_080
Hypothetical protein; Possible pseudogene of transposase (Tra5); identified by sequence similarity.
      
 0.720
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.