Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAM_321Conserved hypothetical protein; Identified by sequence similarity; putative. (164 aa)    
Predicted Functional Partners:
dppB
ABC-type dipeptide/oligopeptide transport system, permease component; Identified by sequence similarity; putative.
  
 
 0.887
dppB-2
ABC-type dipeptide/oligopeptide transport system, permease component; Identified by sequence similarity; putative.
  
 
 0.887
cbiO
ABC-type cobalt transport system, ATPase; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
  
 
 0.797
oppF
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative.
  
 
 0.797
PAM_193
Conserved hypothetical protein; Identified by sequence similarity; putative; ATPase components of various ABC-type transport system.
  
 
 0.797
PAM_322
Hypothetical protein; Identified by Glimmer2.
       0.737
dppD
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
  
 0.613
dppD-2
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative.
  
  
 0.613
ssb-4
Single-stranded DNA-binding protein; Identified by sequence similarity; putative.
     
 0.584
PAM_023
Hypothetical protein; Identified by Glimmer2.
  
  
 0.583
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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