Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAM_334Hypothetical protein; Possible pseudogene of replicative DNA helicase (DnaB); identified by sequence similarity. (165 aa)    
Predicted Functional Partners:
dnaC
DNA replication protein; Identified by sequence similarity; putative.
 
 
 0.817
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
   
 
 0.723
PAM_075
Hypothetical protein; Possible pseudogene of DNA primase (DnaG); identified by sequence similarity.
  
 
 0.669
PAM_387
Hypothetical protein; Possible pseudogene of DNA primase (DnaG); identified by sequence similarity.
  
 
 0.669
dnaG
DNA primase; Identified by sequence similarity; putative.
  
 
 0.669
dnaG-2
DNA primase; Identified by sequence similarity; putative.
  
 
 0.669
dnaG-3
DNA primase; Identified by sequence similarity; putative.
  
 
 0.669
dnaG-4
DNA primase; Identified by sequence similarity; putative.
  
 
 0.669
dnaG-5
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
 
 0.669
dnaG-6
DNA primase; Identified by sequence similarity; putative.
  
 
 0.669
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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