Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hflB-8ATP-dependent Zn protease; Identified by sequence similarity; putative; FtsH; Belongs to the AAA ATPase family. (516 aa)    
Predicted Functional Partners:
PAM_155
Hypothetical protein; Possible pseudogene of ATP-dependent Zn proteaseHflB (FtsH); identified by sequence similarity.
 
     0.886
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.763
hflB-17
ATP-dependent Zn protease; Identified by sequence similarity; putative; FtsH.
  
     0.756
rpmF
Ribosomal protein L32; Identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL32 family.
  
 0.749
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.739
rplI
Exopolyphosphatase-related protein; Binds to the 23S rRNA.
  
 
 0.737
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.735
PAM_578
Hypothetical protein; Possible pseudogene of ATP-dependent Zn proteaseHflB (FtsH); identified by sequence similarity.
 
     0.733
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
 
 0.724
rplQ
Ribosomal protein L17; Identified by sequence similarity; putative.
   
 
 0.724
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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