STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAM_486Hypothetical protein; Identified by Glimmer2. (191 aa)    
Predicted Functional Partners:
ibpA
Molecular chaperone; Probable chaperone.
      
 0.720
PAM_157
Conserved hypothetical protein; Identified by sequence similarity; putative.
      
 0.720
PAM_289
Conserved hypothetical protein; Identified by sequence similarity; putative.
      
 0.720
tengu
Tengu-su inducer; Identified by Glimmer2.
     
 0.608
PAM_271
Hypothetical protein; Identified by Glimmer2.
      
 0.585
PAM_485
Hypothetical protein; Identified by Glimmer2.
      
 0.585
PAM_606
Hypothetical protein; Identified by Glimmer2.
      
 0.585
ssb-14
Single-stranded DNA-binding protein; Identified by sequence similarity; putative.
      
 0.585
thrS
threonyl-tRNA synthetase; Identified by sequence similarity; putative.
      
 0.585
rpoD-2
DNA-directed RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.468
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.