Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAM_500Conserved hypothetical protein; Identified by sequence similarity; putative; predicted ATPase. (166 aa)    
Predicted Functional Partners:
PAM_501
Conserved hypothetical protein; Identified by sequence similarity; putative.
  
 
 0.992
QRI7
Glycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (By similarity); Belongs to the KAE1 / TsaD family.
  
 
 0.943
rplI
Exopolyphosphatase-related protein; Binds to the 23S rRNA.
   
 
 0.648
gyrA
DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.624
gyrB
DNA gyrase beta subunit; Identified by sequence similarity; putative.
     
 0.546
PAM_597
Conserved hypothetical protein; Identified by sequence similarity; putative; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.515
pheT
phenylalanyl-tRNA synthetase beta subunit; Identified by sequence similarity; putative; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.515
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Identified by sequence similarity; putative; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
   0.509
miaA
tRNA delta(2)-isopentenylpyrophosphate; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
     
 0.488
sua5
Translation factor; Identified by sequence similarity; putative; Belongs to the SUA5 family.
     
 0.485
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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