PAM_503 protein (Onion yellows) - STRING interaction network

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PAM_503

Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence. (66 aa)

Predicted Functional Partners:

rpoZ

0.764

rpoC

0.728

rpoA

0.727

rpoB

0.727

trxA

0.611

rpsO

0.576

rplN

0.507

PAM_502

0.469

gyrA

0.456

gyrB

0.439

Your Current Organism:

Onion yellows

NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAM_502	PAM_503	PAM_502	PAM_503	Conserved hypothetical protein; Identified by sequence similarity; putative.	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	0.469
PAM_503	PAM_502	PAM_503	PAM_502	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	Conserved hypothetical protein; Identified by sequence similarity; putative.	0.469
PAM_503	gyrA	PAM_503	PAM_499	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	0.456
PAM_503	gyrB	PAM_503	PAM_498	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	DNA gyrase beta subunit; Identified by sequence similarity; putative.	0.439
PAM_503	rplN	PAM_503	PAM_210	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.507
PAM_503	rpoA	PAM_503	PAM_227	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.727
PAM_503	rpoB	PAM_503	PAM_260	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.727
PAM_503	rpoC	PAM_503	PAM_261	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.728
PAM_503	rpoZ	PAM_503	PAM_736	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	DNA-directed RNA polymerase subunit K/omega; Identified by sequence similarity; putative.	0.764
PAM_503	rpsO	PAM_503	PAM_136	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.576
PAM_503	trxA	PAM_503	PAM_236	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	Thioredoxin; Identified by sequence similarity; putative.	0.611
gyrA	PAM_503	PAM_499	PAM_503	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase specialized sigma subunit (FliA); identified by sequence.	0.456
gyrA	gyrB	PAM_499	PAM_498	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	DNA gyrase beta subunit; Identified by sequence similarity; putative.	0.999
gyrA	rplN	PAM_499	PAM_210	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.426
gyrA	rpoA	PAM_499	PAM_227	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.711
gyrA	rpoB	PAM_499	PAM_260	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.690
gyrA	rpoC	PAM_499	PAM_261	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.524
gyrA	rpoZ	PAM_499	PAM_736	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	DNA-directed RNA polymerase subunit K/omega; Identified by sequence similarity; putative.	0.575
gyrA	rpsO	PAM_499	PAM_136	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.829
gyrA	trxA	PAM_499	PAM_236	DNA gyrase alpha subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.	Thioredoxin; Identified by sequence similarity; putative.	0.617