Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dam-4Site-specific DNA methylase; Identified by sequence similarity; putative. (294 aa)    
Predicted Functional Partners:
rplI
Exopolyphosphatase-related protein; Binds to the 23S rRNA.
  
  
 0.586
ssb-11
Single-stranded DNA-binding protein; Identified by sequence similarity; putative.
       0.536
dnaC
DNA replication protein; Identified by sequence similarity; putative.
  
  
 0.512
PAM_299
N6-adenine-specific methylase; Identified by sequence similarity; putative.
     
 0.442
gyrB
DNA gyrase beta subunit; Identified by sequence similarity; putative.
  
  
 0.402
PAM_342
Retron-type reverse transcriptase; Identified by sequence similarity; putative.
     
 0.401
PAM_566
Hypothetical protein; Possible pseudogene of DNA-directed RNA polymerase sigma subunit; identified by sequence similarity; Belongs to the sigma-70 factor family.
       0.400
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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