Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dnaB-8Replication initiation/membrane attachment; Identified by sequence similarity; putative. (397 aa)    
Predicted Functional Partners:
dnaC
DNA replication protein; Identified by sequence similarity; putative.
 
  
 0.949
polA
DNA polymerase I; Identified by sequence similarity; putative.
 
   
 0.912
nei
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
  
  
 0.880
rplI
Exopolyphosphatase-related protein; Binds to the 23S rRNA.
 
  
 0.821
PAM_609
Conserved hypothetical protein; Identified by sequence similarity; putative.
 
   
 0.710
holA
DNA polymerase III delta subunit; Identified by sequence similarity; putative.
 
 
 
 0.620
exo
5'-3' exonuclease; Identified by sequence similarity; putative.
     
 0.570
ffh
Signal recognition particle GTPase; Identified by sequence similarity; putative.
  
  
 0.513
holB
DNA polymerase III, delta prime subunit; Identified by sequence similarity; putative.
  
   
 0.495
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
   
  
 0.486
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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