Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ugpAABC-type sugar transport system, permease; Identified by sequence similarity; putative. (313 aa)    
Predicted Functional Partners:
ugpB
Sugar-binding periplasmic protein; Identified by sequence similarity; putative.
 
 0.999
ugpE
Sugar permease; Identified by sequence similarity; putative.
 
 
 0.997
malK
ABC-type sugar transport system, ATPase; Identified by sequence similarity; putative.
 
 
 0.997
PAM_723
Hypothetical protein; Possible pseudogene of sucrose phosphorylase (AmyA); identified by sequence similarity; putative.
  
  
 0.599
PAM_724
Hypothetical protein; Possible pseudogene of sucrose phosphorylase (AmyA); identified by sequence similarity; putative.
  
  
 0.599
PAM_748
Exopolyphosphatase-related protein; Identified by sequence similarity; putative.
       0.537
PAM_023
Hypothetical protein; Identified by Glimmer2.
   
  
 0.443
dppC
ABC-type dipeptide/oligopeptide system, permease; Identified by sequence similarity; putative.
   
  
 0.443
potA
ABC-type spermidine/putrescine transport systems, ATPase component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
     
 0.441
aceF
Dihydrolipoamide acyltransferase; Identified by sequence similarity; putative.
   
  
 0.438
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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