STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF20831.1L-erythro-3,5-diaminohexanoate dehydrogenase. (353 aa)    
Predicted Functional Partners:
SCF20782.1
Beta-lysine 5,6-aminomutase beta subunit.
 
 
  0.996
SCF20798.1
Beta-lysine 5,6-aminomutase alpha subunit.
 
 
  0.996
SCF36408.1
Uncharacterized conserved protein, DUF849 family.
 
  
  0.974
SCF20747.1
Conserved hypothetical protein.
 
  
  0.960
SCF20764.1
3-aminobutyryl-CoA ammonia-lyase.
 
     0.944
SCF20845.1
L-lysine 2,3-aminomutase.
 
     0.896
SCF20816.1
Hypothetical protein.
       0.861
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.694
SCE77334.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.666
SCF38680.1
8-amino-7-oxononanoate synthase.
  
 
 0.628
Your Current Organism:
Micromonospora mirobrigensis
NCBI taxonomy Id: 262898
Other names: DSM 44830, JCM 13240, LMG 22229, LMG:22229, M. mirobrigensis, Micromonospora mirobrigensis Trujillo et al. 2005, Micromonospora sp. WA201, NBRC 101890, strain WA201
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