STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF46253.1DNA binding domain-containing protein, excisionase family. (60 aa)    
Predicted Functional Partners:
SCF46258.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
     0.883
SCF46228.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
     0.820
SCF46248.1
Hypothetical protein.
 
     0.819
SCF46233.1
Hypothetical protein.
       0.773
SCF46238.1
Hypothetical protein.
       0.773
SCF46243.1
Protein of unknown function (DUF2637).
       0.773
SCF22750.1
Helix-turn-helix domain-containing protein.
 
     0.771
SCF41945.1
Glutamate synthase (NADH) large subunit.
    
  0.750
SCE77334.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.683
SCF46263.1
Hypothetical protein.
  
    0.558
Your Current Organism:
Micromonospora mirobrigensis
NCBI taxonomy Id: 262898
Other names: DSM 44830, JCM 13240, LMG 22229, LMG:22229, M. mirobrigensis, Micromonospora mirobrigensis Trujillo et al. 2005, Micromonospora sp. WA201, NBRC 101890, strain WA201
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