Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCF47298.1 | rplM | GA0070564_11820 | GA0070564_103542 | Hypothetical protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.989 |
| SCF47298.1 | rplS | GA0070564_11820 | GA0070564_101113 | Hypothetical protein. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.987 |
| SCF47298.1 | rplU | GA0070564_11820 | GA0070564_11614 | Hypothetical protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
| SCF47298.1 | rpmB | GA0070564_11820 | GA0070564_101158 | Hypothetical protein. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.990 |
| SCF47298.1 | rpmF | GA0070564_11820 | GA0070564_101148 | Hypothetical protein. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.989 |
| SCF47298.1 | rpmI | GA0070564_11820 | GA0070564_105465 | Hypothetical protein. | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. | 0.988 |
| SCF47298.1 | rpsL | GA0070564_11820 | GA0070564_103605 | Hypothetical protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.987 |
| SCF47298.1 | rpsO | GA0070564_11820 | GA0070564_1015 | Hypothetical protein. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.988 |
| SCF47298.1 | rpsP | GA0070564_11820 | GA0070564_101117 | Hypothetical protein. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.989 |
| SCF47298.1 | rpsT | GA0070564_11820 | GA0070564_11133 | Hypothetical protein. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.990 |
| rplM | SCF47298.1 | GA0070564_103542 | GA0070564_11820 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Hypothetical protein. | 0.989 |
| rplM | rplS | GA0070564_103542 | GA0070564_101113 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| rplM | rplU | GA0070564_103542 | GA0070564_11614 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
| rplM | rpmB | GA0070564_103542 | GA0070564_101158 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
| rplM | rpmF | GA0070564_103542 | GA0070564_101148 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.995 |
| rplM | rpmI | GA0070564_103542 | GA0070564_105465 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. | 0.997 |
| rplM | rpsL | GA0070564_103542 | GA0070564_103605 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
| rplM | rpsO | GA0070564_103542 | GA0070564_1015 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
| rplM | rpsP | GA0070564_103542 | GA0070564_101117 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
| rplM | rpsT | GA0070564_103542 | GA0070564_11133 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.997 |
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