STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB45201.1COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding. (167 aa)    
Predicted Functional Partners:
AEB45200.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
     0.829
AEB43129.1
COG1309 Transcriptional regulator.
  
     0.545
AEB45202.1
Hypothetical protein.
       0.528
AEB44492.1
COG1309 Transcriptional regulator.
  
     0.509
AEB45059.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.475
AEB45000.1
NB-ARC domain protein.
  
     0.432
AEB44460.1
Regulatory protein tetr; COG1309 Transcriptional regulator.
  
     0.409
Your Current Organism:
Verrucosispora maris
NCBI taxonomy Id: 263358
Other names: V. maris AB-18-032, Verrucosispora maris AB-18-032, Verrucosispora maris str. AB-18-032, Verrucosispora maris strain AB-18-032, Verrucosispora sp. AB-18-032
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