Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOO51039.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)    
Predicted Functional Partners:
KOO51038.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.960
KOO48470.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.829
KOO47255.1
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.814
KOO52424.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.808
KOO51543.1
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.807
KOO50035.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.803
KOO51931.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.802
KOO49010.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.797
KOO48685.1
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.794
KOO47863.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.793
Your Current Organism:
Viridibacillus arvi
NCBI taxonomy Id: 263475
Other names: Bacillus arvi, Bacillus arvi Heyrman et al. 2005, Bacillus sp. 433-D9, DSM 16317, LMG 22165, LMG:22165, V. arvi, Viridibacillus arvi (Heyrman et al. 2005) Albert et al. 2007
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