STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTO0113SAM-dependent methyltransferase. (196 aa)    
Predicted Functional Partners:
PTO0114
Hypothetical protein.
       0.693
rps5
Small subunit ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.639
PTO0412
Methyltransferase.
  
 0.633
PTO1401
NADH-quinone oxidoreductase chain B; Belongs to the complex I 20 kDa subunit family.
    
 0.594
PTO1403
NADH-quinone oxidoreductase chain D.
    
 0.588
PTO1402
NADH-quinone oxidoreductase chain C.
   
 0.569
rps9
Small subunit ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
    
  0.557
PTO1535
Phytoene synthase.
    
 0.544
rps15
Small subunit ribosomal protein S15P.
  
  0.518
rpl7ae
Small subunit ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
   
  0.516
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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