Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PTO0141Tryptophan synthase beta chain. (426 aa)    
Predicted Functional Partners:
PTO0345
Tryptophan synthase alpha chain.
   
 0.929
trpC
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
 
 0.812
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
  0.699
PTO0858
Serine hydroxymethyltransferase.
    
  0.699
PTO0238
Threonine dehydratase.
    
 0.689
PTO1365
Phosphoserine phosphatase.
     
  0.685
PTO0700
Hypothetical phosphoserine phosphatase.
     
  0.637
PTO0149
Aspartate racemase.
     
  0.585
PTO0142
Hypothetical protein.
       0.498
PTO0460
Hypothetical protein.
     
  0.477
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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