STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTO0180Extracellular solute-binding protein. (1215 aa)    
Predicted Functional Partners:
PTO0682
Oligopeptide ABC transporter Opp1, permease protein.
 
 0.800
PTO0178
Magnesium-chelatase subunit ChlI.
       0.697
PTO0179
CobN protein.
       0.697
PTO0577
Hypothetical protein.
  
   
 0.697
PTO0683
Oligopeptide ABC transporter Opp1, ATP binding protein.
 
 0.682
PTO0681
Oligopeptide ABC transporter Opp1, permease protein.
 
 0.681
PTO0576
Transcriptional regulator.
  
   
 0.676
PTO0181
Extracellular solute-binding protein.
 
     0.672
PTO0578
Putative maltose phosphorylase.
  
   
 0.664
PTO0217
Dipeptide ABC transporter Dpp1, permease protein.
 
 0.653
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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