Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rps27eSmall subunit ribosomal protein S27E. (69 aa)    
Predicted Functional Partners:
rpl44e
Large subunit ribosomal protein L44E; Binds to the 23S rRNA.
  
 
 0.999
rps14
Small subunit ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
 0.997
rps19e
Small subunit ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.996
rps17e
Small subunit ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
 
 0.996
rps11
Small subunit ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
  0.996
rps4e
Small subunit ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.995
rpl15e
Large subunit ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.995
rps8e
Small subunit ribosomal protein S8E.
   
 0.995
rps24e
Small subunit ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.993
rps9
Small subunit ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
   
  0.992
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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