| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PTO0259 | rpl11 | PTO0259 | PTO0437 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.999 |
| PTO0259 | rpl13 | PTO0259 | PTO0323 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.979 |
| PTO0259 | rps15 | PTO0259 | PTO0244 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Small subunit ribosomal protein S15P. | 0.968 |
| PTO0259 | rps19e | PTO0259 | PTO0203 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Small subunit ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. | 0.458 |
| PTO0259 | rps9 | PTO0259 | PTO0324 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Small subunit ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
| rpl11 | PTO0259 | PTO0437 | PTO0259 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpl11 | rpl13 | PTO0437 | PTO0323 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rpl11 | rpl18e | PTO0437 | PTO0322 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Large subunit ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. | 0.999 |
| rpl11 | rpl21e | PTO0437 | PTO0389 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Large subunit ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. | 0.999 |
| rpl11 | rpl31e | PTO0437 | PTO0206 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Large subunit ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family. | 0.999 |
| rpl11 | rpl37ae | PTO0437 | PTO0392 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Large subunit ribosomal protein L37AE; Binds to the 23S rRNA. | 0.999 |
| rpl11 | rpl44e | PTO0437 | PTO0407 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Large subunit ribosomal protein L44E; Binds to the 23S rRNA. | 0.999 |
| rpl11 | rps15 | PTO0437 | PTO0244 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Small subunit ribosomal protein S15P. | 0.999 |
| rpl11 | rps19e | PTO0437 | PTO0203 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Small subunit ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. | 0.999 |
| rpl11 | rps9 | PTO0437 | PTO0324 | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Small subunit ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rpl13 | PTO0259 | PTO0323 | PTO0259 | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.979 |
| rpl13 | rpl11 | PTO0323 | PTO0437 | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.999 |
| rpl13 | rpl18e | PTO0323 | PTO0322 | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. | 0.999 |
| rpl13 | rpl21e | PTO0323 | PTO0389 | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. | 0.999 |
| rpl13 | rpl31e | PTO0323 | PTO0206 | Large subunit ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family. | 0.999 |