Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PTO0541UDP-glucose 4-epimerase. (309 aa)    
Predicted Functional Partners:
PTO0702
Mannose-1-phosphate guanyltransferase.
  
 0.945
PTO0307
Glucose-1-phosphate uridylyltransferase.
 
 
 0.929
PTO0312
dTDP-glucose 4,6-dehydratase.
 
  
 
0.910
PTO1078
UDP sulfoquinovose synthase.
    
  0.894
rps14
Small subunit ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
  0.879
rps3ae
Small subunit ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.
   
  0.843
rps19
Small subunit ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.842
rps3
Small subunit ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
  0.832
rps7
30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
  
 0.831
PTO0308
dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase.
  
 0.830
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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