STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTO0700Hypothetical phosphoserine phosphatase. (303 aa)    
Predicted Functional Partners:
PTO0724
Archaeosine tRNA-ribosyltransferase.
 
   
 0.852
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
  0.819
PTO0345
Tryptophan synthase alpha chain.
     
  0.757
PTO0434
Hypothetical transmembrane protein DUF 373.
 
     0.735
PTO0507
Putative aromatic ring hydroxylating enzyme.
     
 0.715
PTO1419
Replication factor-A protein 1.
 
     0.686
PTO1418
Hypothetical protein.
 
     0.681
PTO0851
Archaeal hypothetical protein; Belongs to the UPF0179 family.
  
     0.676
PTO0703
Hypothetical ribosomal protein.
  
     0.663
PTO0701
Hypothetical protein DUF 131.
       0.642
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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