Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTO0766Amino acid permease. (521 aa)    
Predicted Functional Partners:
PTO0764
Oligopeptide ABC transporter Dpp1, ATP binding protein.
       0.773
PTO0765
Oligopeptide ABC transporter Dpp1, ATP binding protein.
       0.773
PTO0552
Transporter.
  
     0.655
PTO0072
Transporter.
  
   0.621
PTO0195
Amino acid transporter.
  
     0.590
PTO0100
Transporter.
  
   0.576
PTO0073
Transporter.
  
     0.558
PTO1350
Transporter.
  
     0.543
PTO0167
Amino acid permease.
  
     0.537
PTO1278
Transporter.
  
     0.524
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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