Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTO0888CBS domain containing protein. (143 aa)    
Predicted Functional Partners:
PTO0889
Citrate synthase.
  
  
 0.781
rps4
Small subunit ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 0.781
PTO0887
Dihydrolipoamide dehydrogenase.
  
   0.755
rps14
Small subunit ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
    
  0.751
PTO0890
Methyltransferase.
  
   0.710
rps5
Small subunit ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
   
  0.706
PTO1395
Glutamine amidotransferases class-II.
       0.684
rps15
Small subunit ribosomal protein S15P.
 
  0.667
rps17
Small subunit ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
  0.654
rps2
Small subunit ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
  
   0.627
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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