STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ef1bArchaeal protein translation elongation factor 1 subunit beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (101 aa)    
Predicted Functional Partners:
tuf
Protein translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
 0.998
rps3
Small subunit ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
   0.994
rpl21e
Large subunit ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
 
 
 0.988
rpl15e
Large subunit ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
   
   0.987
rpl14
Large subunit ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.983
rpl29
Large subunit ribosomal protein S29P; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.981
rpl24e
Large subunit ribosomal protein L24E; Binds to the 23S rRNA.
   
   0.981
rps17e
Small subunit ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.979
rps24e
Small subunit ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
   0.978
PTO1163
Zinc finger protein.
 
  
 0.978
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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