Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTO1350Transporter. (416 aa)    
Predicted Functional Partners:
PTO0685
Oligopeptide ABC transporter Opp1, extracellular binding protein.
  
     0.655
PTO0018
Extracellular solute-binding protein.
  
     0.640
PTO0180
Extracellular solute-binding protein.
  
     0.635
PTO0552
Transporter.
  
     0.621
PTO0945
Hypothetical protein; Contains acetyltransferase domain.
  
     0.617
PTO0946
Amino acid transporter.
  
     0.616
PTO1349
Signal sequence processing protein Sec11 precursor.
       0.615
PTO0578
Putative maltose phosphorylase.
  
     0.605
PTO0577
Hypothetical protein.
  
     0.602
PTO0576
Transcriptional regulator.
  
     0.587
Your Current Organism:
Picrophilus torridus
NCBI taxonomy Id: 263820
Other names: P. torridus DSM 9790, Picrophilus torridus DSM 9790, Picrophilus torridus DSM9790, Picrophilus torridus str. DSM 9790, Picrophilus torridus strain DSM 9790
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