Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PTO0531 | PTO0899 | PTO0531 | PTO0899 | Argininosuccinate lyase. | Carbamoyl-phosphate synthase. | 0.895 |
PTO0531 | PTO1470 | PTO0531 | PTO1470 | Argininosuccinate lyase. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.986 |
PTO0531 | argF | PTO0531 | PTO0732 | Argininosuccinate lyase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.899 |
PTO0531 | argG | PTO0531 | PTO0530 | Argininosuccinate lyase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.999 |
PTO0531 | carA | PTO0531 | PTO0900 | Argininosuccinate lyase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.755 |
PTO0531 | lysK | PTO0531 | PTO1468 | Argininosuccinate lyase. | Acetylornithine deacetylase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine. | 0.584 |
PTO0531 | lysY | PTO0531 | PTO1472 | Argininosuccinate lyase. | N-acetyl-gamma-glutamyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily. | 0.997 |
PTO0531 | lysZ | PTO0531 | PTO1471 | Argininosuccinate lyase. | Acetylglutamate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | 0.997 |
PTO0899 | PTO0531 | PTO0899 | PTO0531 | Carbamoyl-phosphate synthase. | Argininosuccinate lyase. | 0.895 |
PTO0899 | PTO1470 | PTO0899 | PTO1470 | Carbamoyl-phosphate synthase. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.801 |
PTO0899 | argF | PTO0899 | PTO0732 | Carbamoyl-phosphate synthase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.992 |
PTO0899 | argG | PTO0899 | PTO0530 | Carbamoyl-phosphate synthase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.997 |
PTO0899 | carA | PTO0899 | PTO0900 | Carbamoyl-phosphate synthase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.999 |
PTO0899 | lysY | PTO0899 | PTO1472 | Carbamoyl-phosphate synthase. | N-acetyl-gamma-glutamyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily. | 0.860 |
PTO0899 | lysZ | PTO0899 | PTO1471 | Carbamoyl-phosphate synthase. | Acetylglutamate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | 0.856 |
PTO1469 | PTO1470 | PTO1469 | PTO1470 | RimK-like protein; Part of lysine biosynthesis. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.819 |
PTO1469 | PTO1473 | PTO1469 | PTO1473 | RimK-like protein; Part of lysine biosynthesis. | Conserved hypothetical protein; Conserved link to gene encoding Thermus thermophilus 54aa Rimk-homolog. | 0.965 |
PTO1469 | lysK | PTO1469 | PTO1468 | RimK-like protein; Part of lysine biosynthesis. | Acetylornithine deacetylase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine. | 0.899 |
PTO1469 | lysY | PTO1469 | PTO1472 | RimK-like protein; Part of lysine biosynthesis. | N-acetyl-gamma-glutamyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily. | 0.819 |
PTO1469 | lysZ | PTO1469 | PTO1471 | RimK-like protein; Part of lysine biosynthesis. | Acetylglutamate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | 0.984 |
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